Breed Bio Genotyper
Genotyper is an application of the Breed Bio cloud platform supporting that helps you analyze and interpret of endpoint PCR data. Our AI algorithms automate the classification of different alleles based on the raw fluorescent data. As you authorize & review data, the AI improves and uses historical classifications to bias its future results.
Logging in
Breed Bio Genotyper is browser based and is accessed via:
{{customername}} is defined variably per laboratory environment.
Analyzing data
There are two methods of analyzing data in Genotyper.
We support a file-based data import for most plate readers available on the market. Several file formats are supported of the shelve, or custom-made parsers can be developed for your specific use.
For users of LGC's Kraken software, data can be imported automatically with our Kraken integration software, Genotyper Drive.
Using the intregration, Kraken project with specific statusses are automatically uploaded and analyzed in Genotyper. When submitting the results in Genotyper they are automatically updated & submitted in Kraken, too. The user can also manually select projects from their Kraken database and import into Genotyper.
Key concepts
Algorithm: The automated analysis component in Genotyper. The algorithm differentiates clusters and will provide a result for each datapoint. The call is the genotype classification of a sample, scored by the algorithm or edited manually by the user.
Analysis: A group of PCR results over one or multiple assays and one or multiple plates that are imported and analyzed together.
Laboratory environment: the shared workspace for all Breed Bio Genotyper users in your laboratory, pertaining to a single database and a set of users managed by your Admin-users from the Team module.
Master plate: typically the first plate that contains the original sample material. Oftentimes called a sample plate.
Navigating Genotyper
Hover over the navigation icon in the upper left corner to open the navigation menu and switch modules within Genotyper.
From the middle panel of the navigation menu you can browse to your other Breed Bio apps, such as Metrics.